I haven't inserted a cry so I tried to re-point zapdos's cry to pokemon 252 and when I encountered 252 in-game it just made unown's cry as usual, rather than zapdos like I wanted it to. I did test to see that the re-point stayed, and it did, so I don't understand what's happening.
Uh, I'm having difficulty understanding what you mean. If your trying to repoint the ?????????? pokemon, you can't. Plus this tool is outdated by my newer tool, A-Cry.