Hey Migit78, I finally got my AR to update... you are going to laugh because I spent an hour trying to update it getting the same protocol error, i'm like WTF... I google it today, and I found out I CANNOT HAVE ANY GAME CARDS IN BESIDES THE AR! I had my Pokemon Ruby in there the entire time xD
Also, can you send me the AR cloning code in a PM or VM when you get a chance, so you don't have to bother cloning it for me.
This is a copy of the VM I sent, just in case you didnt see it... Sorry for posting this if you did.