Although I love both Pokemon and Digimon, Pokemon wins for me. And I'm not just saying that cause this is a Pokemon forum. The franchise has alot more to offer plus I have harder time following the Digimon anime. Digimon games are not really good and I never could get into them as much as the Pokemon games. I grew up with Pokemon both anime and games. I only started watching Digimon when the series was no longer on the air and they had reruns on Jetix. I really like how the Digimon is much deeper though. I wish the Pokemon anime had more of that. It's sort of what made lose interest in the Pokemon anime. There's a lack of meaning in the story and mostly filler and battles.
But overall Pokemon is better.