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Well, there have been constant rumors of connections to chromosomes and such, and personally, story-wise, I'd like to see this:
>Longer metagame time concerning the plot.
>A deeper, more serious storyline akin to B/W, but just slightly more serious. And, by that, I mean having the villains (Peons especially) be less comical.
>The origins of Man explained, along with our co-habitation with Pokemon.
>Some sort of personal struggle for the player, either one that could branch the story into multiple end results, or one that will leave us with a lingering sense of "What if?" after the credits role.
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