Greetings everyone. I had to restart my Save File because I didn't play long enough to finish Pokémon X. Here's my storyline handwaving the whole reset. (Including the part where I had to use Pokémon Bank to save all of my Pokémon)
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Time had run out. *Spoiler* had finished his super weapon. With nobody opposing him any longer, he decides that he will give the planet some time to think about what nasty surprises he have in store for them. James Lee McKigney (Me) just woke up after a long time of inactivity, just hearing about *Spoiler*'s sinister plot to destroy the earth.
Fearing for his Pokémon's Lives, he decided to send them all (Including his Calm Starter Travis Magic) to a hyper dimensional storage facility where they will return when the earth reboots.
"Jim, Don't do this!" Travis Magic tried to reason to his trainer "There's still time to stop whoever's responsible for the destruction of the earth!" "You guys can survive the apocalypse." I replied "When the time is right, go and serve whoever or whatever will be the new master. It might be a different me, It might be a Wised up Ash Ketchem (Who is hopefully not a fraud next time,) It might even be Red, or Gold, or maybe even one of the Smash Brothers. We don't Know. But what I do know is that you must stay in this chamber until the universe is reset and a new champion arrives on the scene. At least you can introduce yourself to said champion and save the earth together."
"JIM! DON'T!" Travis tried to fight the end but it is all for naught. "Goodbye Travis. Take care of the others while I'm gone all right?"
Eventually, all Hell broke loose, Travis and all of the pokemon are safe in the hyperlock storage while McKigney and everyone else is wiped clean off the face of the earth. You can even hear the Sick ******* *Spoiler*'s laugh and the screams of everyone and everything as they are wiped clean off the map.
On February the Fifth 2016, the universe had reboot. Another James Lee McKigney had entered the fray in said reboot universe around this time, Not knowing what kind of Pokémon the former Jim had left for this new universe's Jim.
And also, waiting for McKigney Neo (The new universe's Jim) is a promotional legendary who will be one of many gifts waiting to be opened on the 20th Anniversary of this franchise.