Does anyone know...

[peirateis]

Does anyone know what happened to Red in the Pokemon manga Series? I'm dying to know! And what became of Yellow?

[oni flygon]

Red Meets Yellow and learns that she's girl. Right before the chapter ends, They show Blue(jp) talking to Silver via PokeGear. Then G/S/C chapters begin.

http://www.netkun.com/pockemon/

[shiny_jiggly]

SPOILER AHEAD...
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Red escaped from the crystal (or is it ice?) he was imprisoned in with the help of a mysterious person (Giovanni-like silouhette) and received the 3 legendary stones of Vermillion, which are fire-water-thunder stones that can be reused over and over again.

Not sure though if this is the info you are looking for. You should actually specify the point you are reading from.

[Omega-Brendan]

more detailed version CONTAINS SPOILERS IF YOU HAVEN'T READ SPECIAL!!!!!!!
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The elite 4 team up on Red, Red challenges Bruno first(all od a sudden) and the elite 4 gang up on ash, Bruno's Hitmonlee kicks Red's guts out *nasty* and Lorelei's Cloyster freezes Red and he gets imprisoned in ice. Then its shiny jiggly's throry, after that, he gets on his good'ol bike with Eevee taking the spot of Pika, and helps Surge and Bill out on the battle with Bruno, then Red meets up with the other Dex Bearers(a bit lotr there) and they go erm behind to scenes and beat Lance up... with Yellow getting Pikachu to use the ultimate attack THUNDER on LANCE'S DRAGONITE and knocks him fainted... well yea. Cool isn't it?

Then there's a little epilouge

R/G/B/Y go and do some adventure, Surge and Sabrina resume their gym leader role, but Koga and Giovanni just disapear(later to be replaced by Janine and Green)

[CENSOR FOR oni flygon]Then it shows Yellow wandering around the woods and regrouping with her Pokemon, then ish a dream, and then they wake up and Red gets this ring thingy and ties it onto Yellow... *hint of Special Shipping*[/CENSOR]