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Old August 7th, 2012 (5:05 PM).
~Angel~'s Avatar
Lead developer for Pokémon Millennium
Join Date: Mar 2010
Location: United States Of America.
Age: 19
Gender: Male
Nature: Quiet
Posts: 272
So I got more to reveal about the story line. There are protecters of legendary pokemon. Each assigned by type (Some by the way they act.) Spoilers about specific people click if you want to see.
Giovanni (One of the main characters) is the good guy. He is the protecter of Deoxys. You will meet him in a cave and he speaks about deoxys and how he found where he lies. He protects the cave until you defeat the 4th gym leader. At which Cyrus captures and uses a replica of Deoxys to force others and pokemon to work for him creating his own world. Me and a friend are still working on this. Till next time!