FireRed hack: Pokemon Dark Era™

Hello,[PLAYER].
You're a boy or a girl who lives deep within a forest and in a village called: Gale Village
You get bored of your life, and go into the haunted net center, where a meteorite has fallen and slaughtered everybody who enters the place. Your friend(depends if you're a boy or girl.)
shall appear as(Sapphire, or Riley). will be handing you.(Boy:Magby,Girl:Horsea). You go inside and see everything trashed up and fight a gang of Pokemon: Targets: Pikachu,Torchic,Espeon.

Era of Mystery Dungeon
After the events of MD2 a Dark Portal has appeared and travels all pokemon into the year 2345, where humans exist. A Few Pokemon such as a Pikachu(refference to DJG's hack) is/was a human before, but then saw how modern time trainers treat Pokemon poorly, this causes other pokemon from the other side to come and form an alliance to take down humans.

Reign of Darkness
A Corrupted Shadow Lugia, has fallen and is hidden in the Kingdom of Neal.
He has controlled the henchman of Neal in the year 5935. and find a secret Portal to the year 2345 and plans to build an army to seek darkness.

Evolution
Back in the year 65,000,000 B.C. in the otherside. Pokemon were created by a human who was stuck in the past(and used to be in 2345) and conducted experiments and then every vial of his experiments was flushed down to the volcano because they were failed projects.

Years Later in 12,000 B.C. in the cold dark ages, they have emerged and lived happily.
Then when a Pokemon is in danger, and another Pokemon saves them but is ultimately defeated activates a chain reaction called Evolution which evolves the Pokemon.

The Corrupted Future
in 5344(1 year) was the destruction of earth as a giant meteor shower broke through and rammed into the inner core breaking the earth to pieces.
An Entity of Darkness has emerged and attacks the legendaries(all of them), it first was no match. Then it seen lugia, and corrupted it!It now is Shadow Lugia and flees.

Reign of Darkness! Corrupted Future!
In Zen Cave(4th Badge by then.) Riley and Kayla(Sapphire's too long and I aint using May :D) has a little blue portal(to them it's a orb)
It detonate's the souldew of Riley or May has and creates a portal dragging them in. Before they fall to space, Latios comes out and saves it. The 2 kids explore of what happened to the future.

Just your typical talking sandslash
Jagold has found a portal in his world and is sent to Earth-Prime(not EARTH! It's my hack : P). Mistaken by zookeepers, it detains it for altered species.Jagold then is in a zoo for a few months. He then breaks out and runs out with rest of gang POKeMON from the zoo and tries to find a paradise just like his world.

What Happened in 5344
Latios and Latias pursue it after Shadow Lugia is injured. Shadow Lugia uses a dark beam on Latios and Latias and traps it into the soul dew and throws it somewhere in the earth-prime(where it fell thrugh a portal) and The Blue Soul Dew was broken in half somewhere in the Mystic Forest.
Shadow Lugia- an entity of darkness once merged like a symbiote, it's hard to take off.

In Mystery Dungeon timeline(12,000 B.C.)
Lugia(not corrupted), sees a vision in it's eyes seeing a deadly force and travels and then a time drift in the space time contium creates a portal for it to enter..

5344- Resuming :P
A injured Suicune must retreat but is obliterated by Shadow Lugia( Sorry Suicune fans) and destroys Entei because it had no where to run.
The Lugia from 12,000 B.C. has emerged from the portal and challenges it's darker self. Shadow Lugia realizes if he destroy's it, he won't exist and neither would enitity of Darkness so then it damages by putting a scar onto it, which shows in X Cave(where Shadow Lugia has hidden has a scar and why didnt 5344 didn't have one.) and Shadow Lugia retreats.