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It could be a snag ball and Oak is secretly planning to take over the world with Shadow Pokemon.
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Not possible because any ball you use with the Snag Machine becomes a Snag Ball. There are no actual Snag Ball designs, so that's not it.
Anyway, I always assumed it was just the first 5 Pokeballs you get. They're not exactly custom. It was just a fancy was of talking about it, especially being the first game (as it was said in the original RBY as well as FRLG).