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SRV said "not including Hoenn Pokemon." He didn't say there wasn't any in the game at all. The data for all 386 Pokemon are in FRLG. But that doesn't mean all 386 are capturable in just these two games. The Hoenn ones you need to trade over from RSE.
And far as I know, not all Johto Pokemon are in there. Only some are in FRLG and none of them can be captured or even seen until you defeat the E4. The rest of the Johto Pokemon are probably in Emerald.
No you can't get all of the Johto pokemon in the games. You can't get Celebi, Totodile, Cyndaquil, or Chikorita.(plus evolutions) There more but altogether there are 251. But you can get Wynaut and Azurill, Hoenn pokemon, in FR/LG. Breeding Wobbefet with a Lax Incense, and breed Marill holding Sea Incense.
I think one of the only good Johto league pokemon in the game is Larvitar, the others are like sintret, hoppip... small stuff. I bred a box full of Larvitar, but didn't get an admant natured one... :(