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Just made it back to that point, and the shop worked fine this time...
EDIT: After beating the Elite Four, I visited Dread Mountain's basement for the first time in this playthrough, and Kyogre wasn't there. Groudon, however, was.
I have played through and enjoyed this hack, but I found something odd: why is Celebi not found as an event in, say, Pattern Bush? It's not like it doesn't have an overworld sprite, as TCRF proves, and it would certainly make more sense than its current location, as it is the guardian of the...