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Are we even sure that it's the Poké Transfer that's going to be upgraded?
I doubt that the Relocator technology based in Castelia City is going to be completely neglected or removed...
Perhaps the two developers could have synergised their tech, maybe even with the guy in Opelucid City trying...
That battle I'm pretty sure is a part of the new PokeWood movie studio sidestory, which possibly replaces the Musical Hall in Nimbasa City. Brycen seems to play a part in it, too.
In that sense, it's the Pokemon equivalent of the kaiju (Godzilla-like) movie genre.