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What PKMN did you replaced?
Anyways, example you replaced Pichu's backsprite... You need to put the Gible sprite exactly where the Pichu backsprite has been cut-off...
No I don't have links.... sorry, but I can give you a basic idea on what ones to click...
There is a series of videos, the title should have "lesson 1 part 1" in the title. there are a bunch of them teaching basic VB6, enough in fact to give enough knowledge to make a basic tool on your own.
I used Visual Basic 6
It is kinda simple, but only cause I learned to code it on youtube...
It is not a free program... you'll have to find it online, or get a copy of the portable version...