Well! At Bill's house, we have Axel, who's suspected to be an infected, and is now locked in one of Bill's capsules, with Number planning to free him, and Snype looking over him along with an NPC Golduck named Sebastian.
I'm not sure what the Infected are doing : \ It's a while since we heard from them.
Flight and the... Espeon I think, named Ness, are on their way to the underground path, Ness is a wild Pokémon, but not infected.
In the underground tunnel, the army Pokémon, as well as Benny, a couple of NPC Pokémon and humans as well as Carol, a policewoman who's helping Benny try and lead, are fighting off an infected Aggron, who's about to f*ck up their day.
Aaaand... that's about it :o