no, you just enter code manually, here is white's game ID IRAO-0F0875FE and here is black's game ID IRBO 106820A5
also here is the cloning code
94000130 FCFF0300
5200764C 1E523308
1200764C 0000C303
D2000000 00000000
94000130 FCFF0100
5200764C 1E52C303
1200764C 00003308
D2000000 00000000
Hold L after picking up and moving a Pokemon (with your stylist) in your PC to make an identical copy of it.
Its best to do it in empty boxes