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I already told Raikouh how to do this on IRC, but I might as well tell everyone else how to load your save file into No$GBA.
1. Rename your save file to the same name as your ROM file, eg. Diamond.nds, Diamond.SAV (SAV has to be CAPS).
2. Place your save file into the Battery Folder that the No$GBA comes with.
3. Open your emulator with no ROM and make sure your save type is Flash 512K. So go Options > Emulation Setup or F11. The NDS backup data has to be Flash 512K.