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I don't like any of them mostly because I don't like at least one evolution from each of them.
From the Squirtle evolution line: I don't like Squirtle and Blastoise From the Totodile evolution line: I don't like Croconaw and Feraligatr From the Mudkip evolution line: I don't like Mudkip and Marshtomp From the Piplup evolution line: I don't like any of 'em
I almost never choose the water starter in the games. It's usual Grass on my first run through, then Fire. However, I usually obtain them when I'm filling up my dex and out of the ones that I've trained to a decent level, my favorite is Totodile's line.
Generally I would say Squitle, because he evolves into Wartortle (and that's where he would stay as I hate Blastoise). But Totodile evolves into an awesome alligator Pokemon, so I'm going to have to go with him.
Hard to choose because I love all the Water starters. I would go with either Mudkip or Piplup because their evolutions have a unique typing combination. Water/Steel is an interesting combination and Swampert is a much better Water/Ground type than the other wannabes like Whiscash.
I like Totodile who doesn't like a gator that grows up to be 6 feet tall. I hate 1 thing about Totodile when it evolves it looks the same almost but its okay.