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You do not need to "trick" the rom. If you want to trade/battle with real pokemon games all you need to do is download the rom onto a flash cart and trade like you would normally, I have done it before. Although you have to be careful with the way you edit the rom. certain things like changing...
If you want to make tools, there is something i want to edit which i havent seen a tool for. creating new pokemon types and editing the old ones. something where you could create a new type (like light type which so many people want to see) and where you could for example make dark weak against...