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Well, good to know it wasn't something I'd done by accident or what have you. I'll stick with Discharge right now until a new update/fix comes out. Thank you!
Using Overdrive with a Toxtricity resets the game in the middle of the Overdrive animation. (I have 6 badges, taking on Juan's gym trainers with a level 44 Toxtricity)
Otherwise, I have been absolutely loving this hack and it always surprises me what the rom hacking community can do!
EDIT...