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The .zip file appears to be corrupted in some fashion. I wouldn't open it with Windows' default functionality, but managed to uncompress it with 7zip. After I did that, I tried to use the included NUPS patcher, but it told me that the .ups file was corrupted.
Any chance that you could re-upload...
Dylanrockin, if you could post a message about this on the Talk page for that tutorial, I would really appreciate it. I didn't foresee that issue when I wrote it, and having a note about it could help other people in the future.
I totally joined the pokecommunity forums just to reply to this...