I will take care of the rest then.
Cipher Key Lair: The factory in which Shadow Pokemon were mass-produced. The lair is now defunct.
Shadow Lab: A lab in the desert of Orre. Cipher used this lab to initially create Shadow Pokemon and to Create XD 001.
S.S Libra: The wreck of the crusier Libra, which carried a cargo of rare and valuable pokemon like Bonsly. XD001 deposited it in a desert.
Kaminko Lab: The Lab of Dr. Kaminiko who creates useless and defunct inventions
Gateon Port: The port of Orre. A parts shop and herbal medicine shop are here as well as the Krabby Klub where Miror B. works.
CitaDark Isle: Cipher HQ, limited info availible.
Pokemon Lab HQ: Prof. Krane's Lab. Developed the Shadow Scope and a modified Snag Machine. Master Balls are also present.