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I saw that too, but i was finding a cool named one to lv. up so i can get to Join avenue quicker, My first playthrough i changed the time to get Braviary, so i couldn't use join avenue. I traded my pokes and started again.
Just thought of something, the magnemite must be really confused, i...
Update 1,
Just Before getting to apple woods,
I am: Mudkip-Stan
Partner is: Pikachu-Bolt
Bolt Lv.14
ThunderShock, Quick Attack, Tail Whip, ThunderWave
Stan Lv.14
Mud-Slap, Water Gun, Growl, Tackle
its somethings with Cheats i think, it happened on my game?
where u knock out a pokemon with a cheat activated of some sorts but it doesn't get switched out, ???
My first Update
(+2):Pokemans Caught
Patrat
Pidove
Lillipup
Blitzle
Munna
Purloin
(+5):The Items Accuired
Potion x3
Poke Ball x7
Great Ball x2
Dusk Ball
Oran Berries x3
Full Heal
Ultra Ball
Parlyz Heal
Repel
X Speed
X Defense
(+5):Technical and Hidden Machines
TM83-Work Up
HM01-Cut...
Update 2- Im at Iccirus City, just encountered N in Dragonsprial tower, my team is-
Gabite Lv.45
Shelgon Lv.43
Dragonair's Lv.42
Aggron Lv.45
Ampharos Lv.46