well i wont think its good until i fine tune it but its basically like one of the games from team rockets point of view, but its a new organization (no name yet)
but it starts out that your an orphan living in a small town, and your only friend (your rival) has been given a pokemon and sent out on a journey, so your now lonely and one of the members from the organization comes and takes you to be a new recruit. With them your given a pokemon and pokedex, but you dont know the organization is evil until they send you on a high risk mission to steal all the gym badges, but you decide to earn them and say you stole them. then i guess later on they realise you were betraying their orders and you go through the elite 4, which is the highest rank members in the organization to the leader, who's the man that adopted you.