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Well, you have to go through the gerudo valley without getting caught by the guards. And you have to do the Gerudo dungeon to get ice arrows. Then you have to travel trough the desert to get to the spirit temple that you have to enter first as young link and so as adult link.
Well, in the start it's the same thing as the phantom ganondorf. Same thing you have to do i think. You have to shoot him with a light arrow i think also before you start hitting him. Then the castle falls together and you have to figth the moster he becomes "Ganon"