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Ok so I have the Flower from the girl.
I have the shaymin from the file you provided in the first post.
When I try to use the flower on shaymin it says "It won't have any effect."
From the pictures below you'll see I changed it to Flower Paradise for the location of meeting....it said...
Usually I stay with their names as is, but the 3 starter pokemon from blue and red I like to name after the pokemon from Pokemon the movie....bruteroot (bulba) shellshocker (squirt).
:P