This hack is terrific. I just started playing, and I'm already blown away by the plot depth, the great new ideas, and the exquisite mapping and scripting (I can't script worth a darn, but you've done some great scenes). Keep it up, this is absolutely terrific.
Oh, I have one suggestion. Since you're forced to start with Cyndaquil, I think you should give that particular Cyndaquil the ability to learn abnormal moves. Just a thought. Again, great job!
And one more thing... I just picked up a Rare Candy and wound up with 16 in my bag. Also, Oak gave me 10 potions. The 10 potions is cool, but 16 Rare Candies before the first gym? Is this a glitch?
Does the alpha end with the guy who wants you to find his glasses?