I don't think that all or even that most cub or boy scout leaders or families of the children are homophobic; I think that the organization at a national level is though. Most the the leaders and families of local groups did not sign their kids up for bible study, most of them wanted to get their kids to learn the secular values of teamwork, outdoor-skills, exercise, meeting new people, having responsibility, and having fun.
I feel the same way about Christians. Yes, the Pope(ugh, electing a human leader to interpret divine law is kinda sacrilegious! Anyways he has used his position to spread hate and condemnation of gays), many nationalized ministers(mostly they preach for lucrative purposes), and public figures ( basically actors, politicians, celebrities, or other known people who use their media power to advocate their own religious beliefs sometimes for media attention, lucrative purposes, or both) are individuals that we see a lot of the time through the media. Often the rest of the population of Christians are pigeon-holed into the same category as those listed above, and I think that it an unfair way to demonize an entire group of people. I would say that many, if not most, Christians strive to help others, show acceptance, and do countless other selfless acts to show their kindness and empathy to others; come one, Lady Gaga is a Christian!
The point I want to make is that we should scrutinize leaders and public figures of organizations, but do not assume that others associated with an organization hold the same views. I am not assuming that any of you are criticizing the families/leaders of the scouts as a whole, I just want to make sure that there is a distinction between the two, and that it is important to make that distinction while talking about any group or organization of people.