Book of Moon and are Enemy Controller not the same, and in the end Enemy Controller just can't "replace" Book of Moon (but in Mullet's case, it'll still work because we are going offensive with trample.) Controller just can't take Book of Moon's spot completely...
Cyber Dragon is played in 3s. If it's played in 2, then the last tribute is Airknight Parshath (because everyone panics now with the loss of any way to draw cards). 2 or 3, Cyber Dragon can still be played and very effective no matter how you look at it.
Phoenix is overrated (I said that too many times back in Sept) but it's still used commonly. I won't like it if it has 2400 atk, while all but one of my cards in this deck got lower than that. Of course, an ordinary deck can easily handle Phoenix because certain company completely underrated the power of some certain card and didn't restrict/limit it at all.
Sakuretsu > Bottomless in most cases, but then this deck doesn't have your standard removing monsters, so Bottomless will have to stay.
I still don't see why Waboku should be played again for now, though situations change very quickly with the new Metagame. Everything is so offensive currently, that it's probably much more ideal to destroy the offending monster than to stall it off and deal with it next time. However, I do admit that such mindset is the exact reason why Cyber Dragon is so successful. Everyone tries to destroy each other asap, that an empty field is just guaranteed to show up very quickly, and that's exactly what the "would-have-been-dead-draw" Cyber Dragons want.
Stamping Destruction can't be chained because it's just a normal spell, but it's still a method of destroying magics/traps... we'll see.