A new version with a few fixes has been made available in the OP. (I updated both the Mega and the mediafire link)
However, if you have already played a bit into the game and just want to update, please read the following:
There is a slight issue with the new version. When I was testing out the game with my previous save, wild battles would crash the game for me, and it only worked again after I started a new one. Now I don't know if that is an issue with just my save, or if that is an issue with all saves from the previous version.
I also added HM Items for the moves Rock Smash, Cut, Surf, Fly and Strenght to the game and while that is definetly helpful, if you are past the point in the story where you would obtain them you cannot obtain them anymore. And because HM Items also disable the use of HMs through the party, there are certain areas you cannot progress in.
So there's two solutions to this:
1. Start a new game after updating your game (straightforward, I know).
2. If you are already pretty far in and don't want to lose your progress, and just want to beat the Elite Four: Play the game on your old version as normal, but prepare your team as you would for the Elite Four (catch what you want, breed what you want, EV train if you need to, yadda yadda). Go as far as until you would battle the Warden of Victory Road (he's the last trainer standing in front of the exit, and previously would not allow you to continue because of a typo in his code). Save your game, then update to the new version. Beat the warden (preferably don't lose, because it'll warp you to the last Pokemon Center and you cannot get back to him) and continue to the Pokemon League. Please be aware that if you do this, you are now stuck in the Pokemon League as you need either Surf or Fly to leave and both these moves have been replaced with HM Items, and you cannot get any more wild encounters.
If you want to see what changed, see here:
This release got stalled a little because I tried to add in some more postgame content, but that has been put on hold until the next release, because I'm way to stupid to figure out how to make EBDX's Boss Battle feature work. I'd say look forward to it with the next release, but I might need to scramble some ideas around to make it work without it.
Having a electivire late game would be cool. Btw is there a list of what each move tutor in each town teaches. Spend a lot of time trying to find out who teaches what. Also, is flash tm available in this game?
I've added Electivire to the Safari Zone now, so its obtainable outside the Gift Pokemon on Route 3. I've also added a move tutor list to the Google Docs. Flash is not available, no. Both dark areas in the game have been made dark just for added effect, you shouldn't need Flash to traverse them.