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That's a good question. Based on how I understand it, you can change the Resistance when using Mew Prime's PokePower "Lost Link" (See Off is the name of the card's attack that lets you put Pokemon in the Lost Zone) -- before taking my answer as the final word, I'm going to go ask the rules team if they can provide an answer for this scenario.
Okay, I got an answer for this from PokePop over at PokeGym: Since Mew Prime does not have a resistance in the first place, there is no resistance for the attack to change, which means Mew Prime cannot gain a resistance from the attack. Any Pokemon with a similar ability that did have a resistance, however, would be able to change its resistance since the effect is still technically there, it's just not applicable to Mew Prime.