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i don't think blue was actually looking for them
she was too busy with the mask of ice till she was 14
but just maybe she was searching for them after the gsc saga
but i don't believe, that there are making such a chapter again... escape might be the only chapter in which there is only about blue and silver
now there is everything about the events in battle frontier...maybe(cnances 1 % in my opinion:( ) there is going to be another chances at the end of...
in manga it's important that the pokedex don't come in the wrong hands (perhaps a member of team aqua/magma/rocket/galactic would act as a normal trainer and received it. he could use it for evil)
in anime noone really matter's in which hands there is a pokedex (really stupid)
that's my opinion