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Oh I'm defiantly going to have to say Pikachu,Eevee,Vulpix,Togepi,Pichu,Shinx and strangely I find Burmy cute too xD. I'm a guy but there are certainly a few Pokemon that I think are cute.
there are so many >A<
Mew, Eevee, Espeon, all baby pokemon, all starters, Shinx, Vulpix, Teddiursa, Phanpy, Shaymin, Phione, Celebi, Jirachi, Dratini, Budew, Pikachu, Meowth, Skitty, Buneary, Ralts, i could go on ;3;
I really have to say, though, that I think Chikorita/Bayleef/Meganium are cute, and Pidgey is nothing short of adorable. And Eevee is pretty cute also. :)
Pichu gets major bonus points for an adorable personality too. (Need moar Cherrim appearances in the anime and games for it to get a more fleshed out "species personality" too. :>)
Pichu and Piplup are adorable. D8 They both have adorable personalities to go along with it. Pichu is like, all curious and stuff; Piplup is really cute when he tries to act all tough. haha.