Kinkan Island Arc
- Route 5 have a complete redesign
- Kinkan Island got polished up.
- New dialogues.
- Scenes were changed around.
- The segment where you have to dodge the grunt was removed. It's changed to normal battle.
- Rocket Hideout has a slight redesign.
- Rocket Hideout Room 2's event occurs as soon as you enter the room. (No more looking for the secret panel).
- Some cutscenes were changed slightly
Sunburst Island – Crystal Onix Arc
- Route 4 no longer connects to route 7
- Route 4 has a redesign
[FONT="]o [/FONT]The reason for this is to make the Orange Archipelago more linear, since many people complained that the map were too confusing.
- Route 6 got a complete redesign.
- Route 7 got moved to another location.
- Scuicune, Entei and Raikou can be found here.
- Sunburst Island cave got a complete redesign.