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Virus Ball - Infects the captured Pokemon with a pokerus. Once the captured pokemon is cured of its pokerus, or traded, it becomes a regular Poke Ball. Same catch rate as a standard Poke Ball.
Frustration Ball - for those "I have been pacing outside Mt. Coronet for two hours now, you are going to get into this ball, Absol, and you are going to like it" moments.
The captured pokemon gains the effect of having ten of the respective vitamins fed to them. These'll be rather hard to find, but certainly make EV training a lot easier. XD
Alter Ball-Makes The Pokemon Easier To Catch In Terms Of Catch Rate By 5 (Example,10 Catch Rate Is Now 15)But Only With This Ball (Two Used In A Row-10 Rate-15-20)
Save ball: Instanty saves game after the trainers battle has ended. Catch rate of a Great Ball
Multi Ball: Enables the ball to return to trainer for a limited number of unsuccessfull catches. Catch rate %5 higher of a pokeball
Dark Ball, or Shadow Ball = A pokeball with a lining inside made from a dark matter or such, it is completely black on the outside and extremely effective against Psychic pokemon! sorry tired of an escaping Abra :S. Also you know how most balls have that little red laser? This one has the same thing except it is black and looks more like a sort of fog or mist.
Train Ball. Michael, my little brother, thought it up. He said that it never fails, just like the master ball. Made of old train parts. Also, my little brother said that the master ball fails.