Is this project still ongoing?
Thanks to the anti-gravedig rule, can't reply to the thread in question.
showthread.php?t=267674 (Won't let me post a link since I have less than 15 posts)
I was reading through this and it sounds like an amazing hack. @ShadowGrey Is this project still ongoing? If so, I may have a solution to the problem concerning Pokemon not evolving.
I faced a similar issue in one of my hacks recently, and after playing around a bit I determined that the cause was the tutorial event: Oak's Parcel. Using Rare Candies (or spending abhorrent amounts of time training) to level your Pokemon before delivering Oak's Parcel results in the evolution animation popping up at each level up, but then stopping as if you hit B immediately displaying the text "...?" then returning to the bag (or field, if you leveled through training) thereafter.
If the project has been abandoned, or put on hold, then please disregard this post.
Thank you for reading and have a nice day,
~Prixy