Ooh, what interesting theory that you got, even though I'd appreciate it if you put all of these into spoilers, since it seems that it's too long to fit on my profile page (I was having difficulty of scrolling it down -_-), and somebody else might get disturbed when seeing these because of that reason, I afraid :( Don't get me wrong, I like your theories on all of these, though, but knowing that it's so long, it's best to hide it on [Spoilers] for convenience of everyone :)
And even though some iteration of main games are not perfect, I'm sure Game Freak would make their games perfect again, like Platinum in remedy of Diamond and Pearl, or... Emerald which is the definitive Gen III Hoenn games and all, so at least they putted big effort to make the game enjoyable to anyone if possible.