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Probably the same answer I gave for the "what Pokémon would you keep outside its ball" thread: whatever Pokémon would best translate to my cat—I'm leaning toward Shiny Eevee (but darker grey like its GSC palette)—or Mothim, preferably both.
Spoiler:
Ciel as a kitten, as an adult, and a Shiny Eevee I SR'd in VC Gold and named after him
In-game
Shiny Dunsparce was previously my favorite and signature Pokémon, but lately I've been favoring Wartortle. (My Shiny Wartortle is my walking buddy on the Isle of Armor.)
Growlithe or Abra maybe it would need to be both, I love lots of Pokémon but I always give them the same name, each and every time I play a game so maybe unconsciously it became that way
If not it would probably be Cubone to make sure he or she never feels lonely